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Yuhui Hong

Ph.D. student in Computer Science

I am currently a Ph.D. student in Computer Science at Indiana University Bloomington (IUB) advised by Prof. Haixu Tang. Before that, I received my bachelor's degree in Computer Science and Technology from Xidian University, China in July 2019. From September 2019 to July 2020, I studied as a graduate student at Xi'an Jiaotong University, China.

My research interests focus on deep learning and its applications in bioinformatics, especially molecular representation learning and mass spectrometry related tasks.

Publications ✨

  • [Analytical Chemistry 2024] Hong, Y., Welch, C. J., Piras, P., & Tang, H. (2024). Enhanced Structure-Based Prediction of Chiral Stationary Phases for Chromatographic Enantioseparation from 3D Molecular Conformations. Analytical Chemistry. [paper] [codes]
  • [Bioinformatics 2023] Hong, Y., Li, S., Welch, C. J., Tichy, S., Ye, Y., & Tang, H. (2023). 3DMolMS: Prediction of Tandem Mass Spectra from Three Dimensional Molecular Conformations. Bioinformatics, btad354. [paper] [codes]
  • [Neurocomputing 2022] Li, Y., Hong, Y., Song, Y., Zhu, C., Zhang, Y., & Wang, R. (2022). SiamPolar: Semi-supervised realtime video object segmentation with polar representation. Neurocomputing, 467, 491-503. [arxiv] [paper] [codes]
  • [Neurocomputing 2021] Li, Y., Zhu, C., Liu, Y., Hong, Y., & Wang, J. (2021). Geometric and semantic analysis of road image sequences for traffic scene construction. Neurocomputing, 465, 336-349. [paper] [codes]

Talks & Posters 💡

  • [ASMS 2023] A Machine Learning Model for Chemical Formula Prediction Using Tandem Mass Spectra of Compounds [slides]
  • [ASMS 2022] Prediction of Molecular Tandem Mass Spectra Using 3-Dimensional Conformers [poster]

Professional Services 🙌

  • Reviewer: BMC Genomics, Pharmaceutical Research
  • Sub-reviewer: ISMB 2023, RECOMB 2023, RECOMB 2022

Recent Posts

Jun 12, 2023

Jun 8, 2022

Jun 22, 2021

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